Supplementary Material for "Functional Genomics via Multiscale Analysis: Application to Gene Expression and ChIP-on-chip Data" by G. Lerman, J. McQuown, A. Blais, B.D. Dynlacht, G. Chen and B. Mishra.

Link to Paper

Software (matlab): (all codes are documented)

The main Matlab code (function) used is run_multi_line_2D_bioinfo06.m,
It applies the main function find_multi_line_2D_bioinfo06.p (p-coded at this point).
The function MS_Cartoon_curve_movie_new is mentioned in the documentation, but
is not needed if you set the parameter toon = 0.

Supplementary mathematical paper:

Multiscale Curve and Strip Constructions

Supplementary Data:

Raw data
Figure with all the PCR reactions that were done to confirm the microarray results
(pdf, eps)
Table with results of confirmatory ChIP assays

Supplementary Figures and Tables:

Figures S1-S35 and Tables S1-S5

The research described here has been supported by
NSF grant #0612608 (GL)
and NIH grant #5R01 GM067132-02 (BD)

Any opinions, findings and conclusions or recomendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation (NSF) and NIH.